| On Line DNA/RNA Tools |
 Bacteria Transformation Efficiency Calculator |
BCM Search Launcher: Sequence Utilities |
| Biology, Biotech Companies Directory |
Cis-elements Nucleotide Count Matrices |
| CISTER Cis-element Cluster Finder |
Cluster Buster |
| Codon Plot |
Codon Usage |
| Color Align Conservation |
Combine Fasta |
| CpG Islands |
DNA Molecular Weight Calculator |
| DNA Pattern Finder |
DNA to Protein Translation |
| EMBL Feature Extractor |
EMBL to FASTA |
| EMBL Trans Extractor |
Filter DNA |
| Fuzzy Search DNA |
Fuzzy Search Protein |
| g force rpm calculator |
GC Skew Tool |
| GenBank Feature Extractor |
GenBank to FASTA |
| GenBank Trans Extractor |
GENSCAN at MIT (US) |
| GEO Gene Expression Omnibus |
Grand average of proetin hydropathy Calculator |
| Graphical Codon Usage Analyser |
Group DNA |
| Identity and Similarity of Sequences |
JustBio Sequence Cleaner |
| JustBio Translator |
McPromoter promoter prediction |
| MEME - Motif based sequence analysis |
Motif search -- Improbizer |
| MotifViz |
Multi Reverse Translation |
| Multiple Sequence Alignments |
Mutate DNA |
| NetPrimer (US) |
New England Biolabs Enzyme Finder |
| OD260 Nucleic Acid Concentration Calculator |
OligoCalc |
| ORF Finder |
Pairwise Align Codons |
| Pairwise Align DNA |
PCR Box Titration Calculator v 0.93 |
| PCR Primer Map |
PCR Primer Stats |
| PCR Product Size Calculator |
Phylip online |
| POSSUM detects cis-elements |
Primer3 |
| Random sequences |
Ranodm Coding DNA |
| Reading Sequence Aloud |
REPFIND |
| Reputer |
Restrict Digest |
| RNA folding (Zuker; mirror in Australia) |
Secret Coder Tool |
| Sequence Massager |
Six Frames Translation |
| Skew plots (MIPS Munich) |
SSR Simple Sequence Repeats Extractor |
| Standard Deviation Calculator |
TFSEARCH Transcription Factor Binding Sites |
| The Sequence Manipulation Suite |
TRF Tandem Repeats Finder |
| Web Primer_ DNA and Purpose Entry |
WebGeneMark |
| WWW GeneFisher (Germany) |
Zlab Gene Regulation Tools |
| On Line Protein Sequence Analysis |
| 2ZIP Leucine zipper prediction |
3D-PSSM Protein Fold Recognition |
| amino acid structures |
Antigenicity Plot |
| CE -- 3Dcomparison & alignment |
CODEHOP (based onprotein alignment) |
| CPHmodels - Homology modelling |
DNA Size (kb) Protein Size (kDa) Conversion |
| drawhca -- Hydrophobic Cluster Analysis plot |
Entrez Structure at NCBI |
| ExPASy - SWISS-3DIMAGE |
Filter Protein |
| GENO3D -- Protein 3D Structure |
Group Protein |
| Hydropathicity Plots |
InterProScan |
| Modified and unusual amino acids |
Molecules-R-US |
| Motif Scan (ISREC) |
MOTIF Searching Protein and DNA |
| OPO2 Transmembrane Protein Display |
Physical-chemical AA classification |
| PRATT (EBI) |
PredictProtein - Structure Prediction |
| Primer predict of protein alignment |
Proetin Pairwise Alignment Tool |
| PROSITE at EBI (Hinxton, UK) |
PROSITE at ExPASy (Switzerland) |
| PROTCOMP -- sub-cellular localization |
Protein Isoelectric Point Calculator |
| Protein Molecular Weight Calculator |
Protein Pattern Finder |
| Protein Stats |
Protein Structure Prediction (HMM based) |
| Protein to DNA Translation |
PROWL |
| PROWL - Amino Acid Properties |
PSIPRED protein structure prediction |
| PSORT -- predict protein localization |
Radar Repeats in proteins |
| RandSeq -- Random protein sequence generate |
Ranodm Protein Sequence |
| REPv1.1 Repeats in proteins |
Reverse Translation (all possibilities) |
| Reverse Translationbased oncodon usage) |
SMART - Simple Modular Architecture |
| TargetP-- predict subcellular location |
TMHMM - transmembrane helices predict |
| TMpred -- Transmemebrane prediction |
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| Sequence Similarity/Alignment and Phylogenetics |
| AA composition protein search (ExPASY) |
Alignment (MichiganTech, US) |
| BCMPairwise Sequence Alignment |
BLAST (Japan) |
| BLAST (NCBI) |
BLAST at EBI (UK) |
| BLAST2SRS retrieval tool - protein only (EMBL) |
BoxShade Server (Switzerland) |
| CINEMA (Color Editor for Alignments) |
CLUSTALW at BCM (USA) |
| CLUSTALW at EBI (UK) |
Dali -- protein3-Dstructure compare |
| DIALIGN (BiBiServ) |
Do-It-Yourself WU-Blast |
| DOT PLOT (Colorado State University) |
DOT PLOT FLAG (Taiwan) |
| DOTMATCHER (Emboss) |
FASTA at EBI (UK) |
| LALIGN (local) at MBDC (Oxford, UK) |
LALIGN (local) at University of Virginia (USA) |
| MBS - ALIGNER |
MPsrch Smith Waterman at EBI (UK) |
| MUSCLE protein sequence alignment |
OWL BLAST Server |
| PFAM |
PipeAlign DbClustal |
| PipMaker |
PROPSEARCH at InfoBioSud |
| Rose random model of sequence evolution |
SAM_ Sequence Alignment and Modeling |
| SplitsTree (BiBiserv) |
T-COFFEE server |
| WebLogo |
|
| On Line Biology Databases and Resources |
| AcroMed -- a database of biomedical acronyms |
Amino Acid and Codon Table |
| Amino Acid Properties |
ARGH -- Biomedical Acronym Resolver |
| BCCM |
BMERC Completed Genomes collected |
| BWS -- BIOSMILE web search |
Codon Usage Database |
| COG (NCBI) |
COG Clusters of Orthologous Groups |
| COPE -- Cytokines Online Pathfinder Encyclopaedia |
DBTss |
| dcode |
DNA Structures |
| EPD(promoter) |
ERGO (Integrated Genomics, Inc.) |
| Genome Channel (Oak Ridge, US) |
Genome Monitoring Table (daily update EBI) |
| GOLD Genomes Database |
HOBACGEN Homologous Bacterial Genes Database |
| Huge Index Database |
InterPro |
| Jaspar(TF binding DB) |
KEGG |
| LSPD |
NCBI Complete Microbial Genomes |
| NCGR National Center for Genome Resources |
OMGProm |
| OMIM Home |
ORegAnno |
| Organism-specific Databases |
PEDANT CrossGenome categories |
| PEDANT front page |
Protocol On-line |
| PubMed Home |
Restrict Enzyme Domain |
| SAGEmap |
SPD |
| T1DBase |
Tavi's PCR protocols |
| TaxPlot (NCBI) |
TIGR |
| Tiprod(promoter) |
TissueInfo |
| VectorDB |
WIT Home Page |
| Genome Projects |
| 1000 Genomes Project |
Arabidopsis thaliana |
| Berkeley Drosophila Genome Project |
C. elegans project |
| Cancer Genome Project |
DDBJ Genome Information Broker |
| DNA Structural Analysis Sequenced Genomes |
Elephant Shark Genome Project |
| Genome Projects Database (NCBI) |
GOLD Genomes OnLine Database |
| HapMap Project |
Horse Genome Project |
| Ixodes Genome Project |
Leishmania Genome Network |
| Malaria Genetics & Genomics |
PEDANT complete genomes |
| Personal Genome Project - Public Profile |
Retroviruses |
| Rice Genome Annotation Project |
Structural Analysis of Microbial Genomes |
| The Maize Genome Browser |
The US Poultry Genome Project Website |
| TIGR Microbial Database |
Trypanosoma brucei Genome Project |
| Free Biology Software |
| ANTHEPROT -- Protein 3D |
Artemis -- Sequence annotation and Viewer |
| Asterias -- genomic data analysis |
BioEdit -- Sequence Alignment Editor |
| BioRainbow -- Binding Site Prediction |
CHROMAS -- Chromatgram file viewer |
| Clann -- Phylogenetics |
CLC free workbench |
| ClustalX -- Sequence alignment |
CURVES -- Helical Analysis |
| Dnasp -- DNA Plymorphism |
GoCore -- Protein Analysis Excel Add-in |
| ISYS -- Biotools integration |
JaDis -- Ka Ks Calculation |
| LDhat -- Recombination Analysis |
Mega -- Phylogenetic |
| pDRAW32 -- Plasmid Map Draw |
Phylogeny softwareSeries |
| RasMol -- Molecule 3D viewer |
RDP -- Recombination Detection |
| SeaView -- Phylogenetic |
Sequin -- NCBI Submission_ |
| SeqVerter -- Sequence format converter |
Visual Cloning -- DrawPlasmid Map |
| Miscellanous |
| Biocompare -- the Buyers' Guide |
Faculty of 1000 |
| Free Patent Online |
Google Scholar |
| HSLS |
Journal Impact Factor |
| Open Access Journals |
Protocol On Line |
| PubMed |
ScienceDaily Biology |
| Scopus - reference citation database |
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